# Journal Publication

## Journal Papers (since 2000)

- Ebadi, M., Moshksayan, K., Kashaninejad,N., Saidi, M.S., and Nguyen, N.T., accepted 2019, A tool for designing tree-like concentration gradient generators for lab-on-achip applications. Chemical Engineering Science.
- Tajik, P., Saidi, M.S., Kashaninejad, N. and Nguyen, N.T., 2019. Simple, Cost-Effective and Continuous 3D Dielectrophoretic Microchip for Concentration and Separation of Bio-Particles. Industrial & Engineering Chemistry Research.
- Rostami, P., Kashaninejad, N., Moshksayan, K., Saidi, M.S., Firoozabadi, B. and Nguyen, N.T., 2019. Novel approaches in cancer management with circulating tumor cell clusters. Journal of Science: Advanced Materials and Devices.
- Bagherabadi, K.M., Sani, M. and Saidi, M.S., 2019. Enhancing Active Electro-Kinetic Micro-Mixer Efficiency by Introducing Vertical Electrodes and Modifying Chamber Aspect Ratio. Chemical Engineering and Processing-Process Intensification, p.107560.
- Taghibakhshi, A., Barisam, M., Saidi, M.S., Kashaninejad, N. and Nguyen, N.T., 2019. Three-Dimensional Modeling of Avascular Tumor Growth in Both Static and Dynamic Culture Platforms. Micromachines, 10(9), p.580.
- Rismanian, M., Saidi, M.S. and Kashaninejad, N., 2019. A new non-dimensional parameter to obtain the minimum mixing length in tree-like concentration gradient generators. Chemical Engineering Science, 195, pp.120-126.
- Sharifi, F., Firoozabadi, B., Saidi, M.S. and Firoozbakhsh, K., 2019. A numerical model for predicting hepatocytes ureagenesis and its related inborn enzyme deficiencies: case studies. Scientia Iranica, 26(1), pp.408-420.
- Maleki Bagherabadi, K., Sani, M. and Saidi, M.S., 2019. Numerical Analysis of Some Active and Passive Electro-Kinetic Micro-Mixers by Applying Poisson-Nernst-Planck and Navier–Stokes (PNP-NSE) Equations. Modares Mechanical Engineering, 19(8), pp.2057-2066.
- Kiyoumarsioskouei, A., Saidi, M.S., Mosadegh, B. and Firoozabadi, B., 2019. A portable culture chamber for studying the effects of hydrostatic pressure on cellular monolayers. Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science, 233(3), pp.807-816.
- Jahromi, R., Pakravan, H.A., Saidi, M.S. and Firoozabadi, B., 2019. Primary stenosis progression versus secondary stenosis formation in the left coronary bifurcation: A mechanical point of view. Biocybernetics and Biomedical Engineering, 39(1), pp.188198.
- R. Jahromi, H. A. Pakravan, M. S. Saidi, and B. Firoozabadi. "Primary stenosis progression versus secondary stenosis formation in the left coronary bifurcation: A mechanical point of view." Biocybernetics and Biomedical Engineering (2018).
- H. Moghadas, M. S. Saidi, N. Kashaninejad, and N-T. Nguyen. "A high-performance polydimethylsiloxane electrospun membrane for cell culture in lab-on-a-chip." Biomicrofluidics 12, no. 2 (2018): 024117.
- M. Barisam, M. S. Saidi, N. Kashaninejad, and N-T. Nguyen. "Prediction of Necrotic Core and Hypoxic Zone of Multicellular Spheroids in a Microbioreactor with a U-Shaped Barrier." Micromachines 9, no. 3 (2018): 94.
- K. Moshksayan, N. Kashaninejad, M. Ebrahimi Warkiani, J. G. Lock, H. Moghadas, B. Firoozabadi, M. S. Saidi, and N-T. Nguyen. "Spheroids-on-a-chip: Recent advances and design considerations in microfluidic platforms for spheroid formation and culture." Sensors and Actuators B: Chemical (2018).
- F. Sharifi, B. Firoozabadi, M. S. Saidi, and K. Firoozbakhsh. "A numerical model for predicting hepatocytes ureagenesis and its related inborn enzyme deficiencies: case studies." Scientia Iranica (2018).
- Kiyoumarsioskouei, M. S. Saidi, H. Moghadas, and B. Firoozabadi. "Plasma based surface modification of Poly (dimethylsiloxane) electrospun membrane proper for Organ on a Chip applications." Scientia Iranica (2018).
- K. Moshksayan, N. Kashaninejad, and M. S. Saidi. "Inventions and Innovations in Preclinical Platforms for Cancer Research." Inventions 3, no. 3 (2018): 43.
- H. Shayestehpour, K. Nassiri Nazif, A. M. Soufi, and M. S. Saidi. "Proposing a highefficiency dielectrophoretic system for separation of dead and live cells." Scientia Iranica. Transaction B, Mechanical Engineering 25, no. 1 (2018): 186-195.
- S. Azimi, and M. S. Saidi. "A new algorithm to solve sinusoidal steady-state Maxwell's equations on unstructured grids." Scientia Iranica 25, no. 3 (2018): 1296-1302.
- H. Moghadas, M. S. Saidi, N. Kashaninejad, and N-T. Nguyen. "Challenge in particle delivery to cells in a microfluidic device." Drug delivery and translational research 8, no. 3 (2018): 830-842.
- R. Kowsari-Esfahan, A. Jahanbakhsh, M. S. Saidi, and S. Bonakdar. "A microfabricated platform for the study of chondrogenesis under different compressive loads." Journal of the mechanical behavior of biomedical materials 78 (2018): 404-413.
- M. R. Nikmaneshi, B. Firoozabadi, and M. S. Saidi. "Fully-coupled mathematical modeling of actomyosin-cytosolic two-phase flow in a highly deformable moving Keratocyte cell." Journal of biomechanics 67 (2018): 37-45.
- M. Barisam, M. S. Saidi, N. Kashaninejad, R. Vadivelu, and N-T. Nguyen. "Numerical simulation of the behavior of toroidal and spheroidal multicellular aggregates in microfluidic devices with microwell and U-shaped barrier." Micromachines 8, no. 12 (2017): 358.
- M. Abdollahzadeh, M. S. Saidi, and A. Sadeghi. "Enhancement of surface adsorptiondesorption rates in microarrays invoking surface charge heterogeneity." Sensors and Actuators B: Chemical 242 (2017): 956-964.
- H. Rajabzadeh-Oghaz, B. Firoozabadi, M. S. Saidi, M. Monjezi, M. A. Navabi Shirazi, and E. M. Rad. "Pulsatile blood flow in total cavopulmonary connection: a comparison between Y-shaped and T-shaped geometry." Medical & biological engineering & computing 55, no. 2 (2017): 213-224.
- S. M. A. Mortazavi, P. Tirandazi, M. Normandie, and M. S. Saidi. "Efficient batch-mode mixing and flow patterns in a microfluidic centrifugal platform: a numerical and experimental study." Microsystem Technologies 23, no. 7 (2017): 2767-2779.
- H. Ghaffari, M. S. Saidi, and B. Firoozabadi. "Biomechanical analysis of actin cytoskeleton function based on a spring network cell model." Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science 231, no. 7 (2017): 1308-1323.
- M. A. Eslami Saray, M. S. Saidi, and G. Ahmadi. "Airflow patterns in a 3D model of the human acinus." Scientia Iranica 24, no. 5 (2017): 2379-2386.
- M. Monjezi, M. S. Saidi, and G. Ahmadi. "Submicron particle deposition in pulmonary alveoli during cyclic breathing." Scientia Iranica. Transaction B, Mechanical Engineering 24, no. 4 (2017): 1975-1984.
- H. Moghadas, M. S. Saidi, N. Kashaninejad, A. Kiyoumarsioskouei, and N-T. Nguyen. "Fabrication and characterization of low-cost, bead-free, durable and hydrophobic electrospun membrane for 3D cell culture." Biomedical microdevices 19, no. 4 (2017): 74.
- S. Ghadami, R. Kowsari-Esfahan, M. S. Saidi, and K. Firoozbakhsh. "Spiral microchannel with stair-like cross section for size-based particle separation." Microfluidics and Nanofluidics 21, no. 7 (2017): 115.
- H. A. Pakravan, M. S. Saidi, and B. Firoozabadi. "A multiscale approach for determining the morphology of endothelial cells at a coronary artery." International journal for numerical methods in biomedical engineering 33, no. 12 (2017): e2891.
- K. Moshksayan, N. Kashaninejad, M. S. Saidi, Mathematical Analysis of a Conventional Microfluidic Device Culturing Tumor Spheroids, International Congress on Cancer Prevention & Early Detection Integration of Research & Action, Archives of Iranian Medicine, (2017).
- Ghasemi V., B. Firoozabadi, and M. S. Saidi. "Theoretical modeling of actin-retrogradeflow passing clusters of confined T cell receptors." Mathematical biosciences 283 (2017): 1-6.
- Shaygani, M. S. Saidi, and M. Sani. "Aerosol nano-particle charger simulations and optimizations." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 5 (2016): 2220.
- M. Zahraei, M. S. Saidi, and M. Sani. "Numerical simulation of electro-deposition process influenced by force convection and migration of ions." Journal of Electroanalytical Chemistry 782 (2016): 117-124.
- M. Monjezi, and M. S. Saidi. "Fluid-structure interaction analysis of air ow in pulmonary alveoli during normal breathing in healthy humans." Scientia Iranica 32, no. 4 (2016): 1826-1836.
- S. A. Mirbagheri, M. S. Saidi, S. Sohrabi, B. Firoozabadi, and M. H. Banazadeh. "Effects of hypertension on Intima-Media Thickness (IMT); application to a human carotid artery." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 4 (2016): 1731.
- M. Reshadi, M. H. Saidi, B. Firoozabadi, and M. S. Saidi. "Electrokinetic and aspect ratio effects on secondary flow of viscoelastic fluids in rectangular microchannels." Microfluidics and Nanofluidics 20, no. 8 (2016): 117.
- N. Kashaninejad, M. R. Nikmaneshi, H. Moghadas, A. Kiyoumarsi Oskouei, M. Rismanian, M. Barisam, M. S. Saidi, and B. Firoozabadi. "Organ-tumor-on-a-chip for chemosensitivity assay: a critical review." Micromachines 7, no. 8 (2016): 130.
- S. Yaghoubi, A. R. Pishevar, M. S. Saidi, and E. Shirani. "Modeling self-assembly of the surfactants into biological bilayer membranes with special chemical structures using dissipative particle dynamics method." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 3 (2016): 942.
- Damirchi, M. S. Saidi, M. Rismanian, B. Firoozabadi, and M. Amininasab. "An alternative mechanism for the formation of high density lipoprotein in peripheral tissue." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 2 (2016): 600.
- R. Saifi, A. Shaygani, M. Sani, and M. S. Saidi. "CFD Aided Procedure for Optimizing Electrical Mobility Spectrometer." Journal of Defect & Diffusion Forum, vol. 366. 2016.
- H. A. Pakravan, M. S. Saidi, and B. Firoozabadi. "The importance of fluid-structure interaction simulation for determining the mechanical stimuli of endothelial cells and atheroprone regions in a coronary bifurcation." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 1 (2016): 228.
- H. A. Pakravan, M. S. Saidi, and B. Firoozabadi. "A mechanical model for morphological response of endothelial cells under combined wall shear stress and cyclic stretch loadings." Biomechanics and modeling in mechanobiology 15, no. 5 (2016): 12291243.
- Kiyoumarsioskouei, A. Shamloo, S. Azimi, M. Abeddoust, and M. S. Saidi. "A computational model for estimation of mechanical parameters in chemotactic endothelial cells." Scientia Iranica. Transaction B, Mechanical Engineering 23, no. 1 (2016): 260.
- M. Rismanian, M. S. Saidi, and B. Firoozabadi. "Na+ permeation through its protein channels, from molecular dynamics to continuum modeling." Scientia Iranica. Transaction B, Mechanical Engineering 22, no. 2 (2015): 459.
- M. Taherzadeh, and M. S. Saidi. "Modeling of two-phase flow in porous media with heat generation." International Journal of Multiphase Flow 69 (2015): 115-127.
- M. Taherzadeh, and M. S. Saidi. "Natural circulation in vertical porous annular enclosure with heat generation." Scientia Iranica. Transaction B, Mechanical Engineering 22, no. 1 (2015): 208.
- M. R. Nikmaneshi, B. Firoozabadi, and M. S. Saidi. "Two-Phase Acto-Cytosolic Fluid Flow in a Moving Keratocyte: A 2D Continuum Model." Bulletin of mathematical biology 77, no. 9 (2015): 1813-1832.
- H. Rajabzadeh Oghaz, B. Firoozabadi, M. S. Saidi, M. Monjezi, MA Navabi Shirazi, and E. Malakan Rad. "Evaluation of a novel extra-cardiac Fontan procedure with implantation of a biocompatible membrane." IRBM 36, no. 5 (2015): 287-292.
- H. A. Pakravan, M. S. Saidi, and B. Firoozabadi. "FSI simulation of a healthy coronary bifurcation for studying the mechanical stimuli of endothelial cells under different physiological conditions." Journal of Mechanics in Medicine and Biology 15, no. 05 (2015): 1550089.
- Damirchi, M. Rismanian, M. S. Saidi, and B. Firoozabadi. "Coarse grain molecular dynamics simulation of drug carrier penetration into cell membrane." Modares Mechanical Engineering 14, no. 15 (2015): 316-322.
- V. Khandan, B. Firoozabadi Dehghan, and M. S. Saidi. "Study of inhibition of Aβ42 aggregation and oligomer forming with Docking and MD simulation." Modares Mechanical Engineering 15, no. 1 (2015).
- Shaygani, R. Saifi, M. S. Saidi, and M. Sani. "On the Optimality Assessment of Nanoparticle Size Spectrometry and Its Association to the Entropy Concept." World Academy of Science, Engineering and Technology, International Journal of Mathematical, Computational, Physical, Electrical and Computer Engineering 9, no. 7 (2015): 385-390.
- Yazdani , M. Normandie, M. Yousefi, M.S. Saidi, G. Ahmadi, Transport and Deposition of Pharmaceutical Particles in Three Commercial Spacer-MDI Pairs, computers in biology and medicine, 28 (3) , 1017-1026,(2014)
- M.S.Saidi, M. Rismanian, M. Monejzi , M.Zendehbad, S. Fatehiboroujeni, Comparison between Lagrangian and Eulerian Approaches in Predicting Motion of Micron-Sized Particle in Laminar Flows, Atmospheric Environment, 89,199-206, (2014)
- M.Zabetian, M.B.Shafii, M.H.Saidi, M.S.Saidi, A New Experimental Approach to Investigate the Induced Force and Velocity Fields on a Particulate Manipulation Mechanism, Journal of Scientia Iranica, 21(2), 414-424, (2014)
- M. Monjezi, M. Ghoreyshi1, M. S. Saidi, M. A. Navabi, B. D. Firoozabadi, 3D-1D Simulation of Flow in Fontan Operation: Effects of Antegrade Flow on Flow Pulsations, Journal of Scientia Iranica, 21(4), 1378-1389, (2014)
- A.Mehboudi,M. S.Saidi, Physically based wall boundary condition for dissipative particle dynamics, Microfluidics and Nanofluidics,17 (1), 181-198, (2014)
- S. Mokhtarian, A.Pishevar, M. S.Saidi, A New Boundary Model for Simulating Complex and FlexibleWall Bounded Domain in Dissipative Particle Dynamics, Advances in Mathematical Physics, Volume 2014 , Article ID 812408, 6 pages(2014)
- M. Rismanian, M. S. Saidi, B. Firoozabadi, Na Permeation through its Protein Channels; From Molecular Dynamics to Continuum Modeling, Journal of Scientia Iranica, (2014)
- S. M.Moosavi, A.Sadeghi, M. S.Saidi, Electrophoretic velocity of spherical particles in Quemada fluids, Colloids and Surfaces A: Physicochemical and Engineering Aspects, 436, 225– 230, (2013)
- S. Sohrabi; S. M. NematiMehr; P. Falsafi, A Novel Approach for Compensating the Significance of Tubule’s Architecture in Urine Concentrating Mechanism of Renal Medulla, Proc. ASME. 56222; Volume 3B: Biomedical and Biotechnology Engineering, (2013)
- M.Zabetian, M.S.Saidi, M.B.Shafii, M.H.Saidi, Separation of microparticles suspended in a minichannel using laser radiation pressure, Applied Optics,52(20), 4950–4958, (2013)
- M. Monjezi, R. Dastanpour, M. S. Saidi, A. Pishevar, Prediction of particle deposition in the respiratory track using 3D-1D modeling, Journal of Scientia Iranica, 19 (6), 1479–1486, (2012)
- R. Dastanpour, M. Monjezi, M. S. Saidi, A. Pishevar, Applying a Realistic Novel Ventilation Model Based on Spatial Expansion of Acini in a Stochastic Lung,: Journal of Scientia Iranica, 21(2), 358-369, (2012)
- A.Hemmatifar, M. S.Saidi, A.Sadeghi, M.Sani, Continuous size-based focusing and bifurcating microparticle streams using a negative dielectrophoretic system, Microfluidics and Nanofluidics, 14(1-12) (2012),265-276
- Amir Kiyoumarsioskouei, Mohammad Said Saidi, Bahar Firoozabadi, An endothelial cell model containing cytoskeletal components: Suspension and adherent states, J. Biomedical Science and Engineering, 5 (12), 737-742, (2012)
- M. Toloui, B. Firoozabadi, M.S. Saidi, A numerical study of the effects of blood rheology and vessel deformability on the hemodynamics of carotid bifurcation, Journal of Scientia Iranica, 19 (1), 119-126, (2012)
- M. Toloui, A. Nikparto, B. Firoozabadi, M.S. Saidi, Numerical simulations of haemodynamic factors and hyperelastic Circumferential Strain/Stress in the ideal and healthy-patient-specific carotid bifurcations for different rheological models, InternationalJournal of Biomedical Engineering and Technology (IJBET), 6 (4), 387412,(2011)
- M. Lahooti, A. Pishevar, M.S. Saidi,A, Novel 2D algorithm for fluid solid interaction based on thesmoothed particle hydrodynamics (SPH) method, Journal of ScientiaIranica,18 (3), 358–367,(2011)
- Mehboudi, A. and Saidi, M.S., A systematic method for the complex walls no-slip boundary condition modeling in dissipative particle dynamics, Journal of Scientia Iranica, 18(6),1253-1260,(2011)
- Nasr Azadani, A., Rezaei-Alam, A., Saidi, M.S, Saghafian, M., Investigation of effect of different cross-sections of rotor on two-dimensional transient flow in viscous micropumps, Journal of Numerical Methods in Engineering, 29(2), 67-84 (2011).
- Sani, M., and Saidi, M.S., A lagged implicit segregated data reconstruction procedure to treat open channels, Journal of Computational Physics, Volume 229, Issue 14, 20 July 2010, pp. 5418-5431, (2010)
- Jamalian, S., Jafarnejad, M., Firoozabadi, B., Saidi, M.S., Geometry effects on blood flow in carotid bifurcation, Journal of Scientia Iranica, Vol. 17, No. 5, pp.395-405, (2010).
- Sani, M., and Saidi, M.S., Rayan: a polyhedral grid co-located incompressible finite volume solver (part I: basic design features), Journal of Scientia Iranica, Vol. 17, No. 6, pp. 443-455, (2010).
- IraniRahaghi, A., Saidi, M.S., Saidi, M.H., Shafiei, M., Two-dimensional numerical investigation of a micro combustor, Journal of Scientia Iranica, Vol. 17, No. 6, pp. 433442, (2010).
- Sani, M., and Saidi, M.S., A set of particle locating algorithms not requiring face belonging to cell connectivity data, Journal of Computational Physics, 228(2009) 73577367.
- Saidi, M. S.,Mathematical Modeling of Transport of Aerosol Particles in a Shredded Porous Media, Journal of Porous Media, 12(4), 313-326 (2009).
- Saidi, M.S. and Hajaligol, M.R., Mhaisekar, A., and Subbiah, M., Mathematical Modeling of a Lit-End Cigarette: Puffing Cycle and Effects of Puff Counts, Journal of Beitr. Tabakfosch. Int.,Vol. 23, No.1, pp. 46-62, 2008.
- Saidi, M.S., Hajaligol, M.R., Mhaisekar, A., and Subbiah, M., A 3D Modeling of the Static and Forward Smoldering Combustion of a Packed Bed of Materials, Journal of Appied Mathematical Modeling, Vol. 31, pp. 1970-1996, 2007.
- Saidi, M.S. Mhaisekar, A., Hajaligol, M.R.,and Subbiah, Effects of Thermo-Physical and Flow Parameters on the Static and Dynamic Smoldering of A Cigarette, Journal of Combustion theory and modeling, Vol. 10. No. 6, pp. 939-960, 2006